For the base: Mix 2 tbsp coconut flour, 2 tbsp applesauce, and 1 tbsp water together. For the middle layer: Mix 2 tbsp coconut sugar, 2 tbsp applesauce, 1 tbsp almond flour, 1 tbsp coconut flour, and 1 tbsp chocolate chips together. For the top layer: Use melted vegan chocolate. Mix each layer together separately and let harden in the baking dish. Once hardened, layer each component to form the cups.